species:   Vovol
pid:       PID1208
parent:    vvo-m0828
paralog:   
locus:     KB722759.1:522888-522994
matures:   ['AGGGAUUGGACUUGCUGGAAUGG', 'AGUACCGGCGCUGAUUGUGG']
srr:       SRR10727298
genome:    /Users/jax/+Genomes/Fungal_genomes/Vovol.GCA_000349905.1_VVO_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Gong2020-xh.SRR10727298.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Gong2020-xh.SRR10727298.cram KB722759.1:522888-522994

43 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

                             **********                           *************                            
UGCGUUUCUUGUCCAGAUCGCAAGUACCGGCGCUGAUUGUGGCUGUGACGAUGCAUAGAGGGCUAGGGAUUGGACUUGCUGGAAUGGAAAUAGGGACAGGAGAAGCA
(((.((((((((((..((..(..((.((((((((((((.(((((.(............).)))))..))))))...)))))).)).)..))..)))))))))).)))
----------------------------------------------------------------AGGGAUUGGACUUGCUGGAAUGG-------------------- l=23 a=0 c
----------------------AGUACCGGCGCUGAUUGUGG----------------------------------------------------------------- l=20 a=0 c*
--------------------------------------------------------------------AUUGGACUUGC---------------------------- l=11 a=3 ma
-------------------------------GCUGAUUG-------------------------------------------------------------------- l=8 a=0 ma*

-------------------------ACCGGCGCUG------------------------------------------------------------------------ l=10 a=1 
--------------------------------------------------------------------AUUGGACUUGC---------------------------- l=11 a=3 (ma)

mb-01111
ax-1011101
ku-01
ss-101011111110
fn-011
